Python Data Structure and Algorithm Tutorial – Fibonacci Heap

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Fibonacci Heap

 

In this tutorial, you will learn what a Fibonacci Heap is. Also, you will find working examples of different operations on a fibonacci heap in Python.

Fibonacci heap is a modified form of a binomial heap with more efficient heap operations than that supported by the binomial and binary heaps.

Unlike binary heap, a node can have more than two children.

The fibonacci heap is called a fibonacci heap because the trees are constructed in a way such that a tree of order n has at least Fn+2 nodes in it, where Fn+2 is the (n + 2)nd Fibonacci number.

Fibonacci Heap
Fibonacci Heap

Properties of a Fibonacci Heap

Important properties of a Fibonacci heap are:

  1. It is a set of min heap-ordered trees. (i.e. The parent is always smaller than the children.)
  2. A pointer is maintained at the minimum element node.
  3. It consists of a set of marked nodes. (Decrease key operation)
  4. The trees within a Fibonacci heap are unordered but rooted.

Memory Representation of the Nodes in a Fibonacci Heap

The roots of all the trees are linked together for faster access. The child nodes of a parent node are connected to each other through a circular doubly linked list as shown below.

There are two main advantages of using a circular doubly linked list.

  1. Deleting a node from the tree takes O(1) time.
  2. The concatenation of two such lists takes O(1) time.
Fibonacci Heap Structure
Fibonacci Heap Structure

Operations on a Fibonacci Heap

Insertion

Algorithm

insert(H, x)
    degree[x] = 0
    p[x] = NIL
    child[x] = NIL
    left[x] = x
    right[x] = x
    mark[x] = FALSE
    concatenate the root list containing x with root list H 
    if min[H] == NIL or key[x] < key[min[H]]
        then min[H] = x
    n[H] = n[H] + 1

Inserting a node into an already existing heap follows the steps below.

  1. Create a new node for the element.
  2. Check if the heap is empty.
  3. If the heap is empty, set the new node as a root node and mark it min.
  4. Else, insert the node into the root list and update min.
Insertion operation in fibonacci heap
Insertion Example

Find Min

The minimum element is always given by the min pointer.

Union

Union of two fibonacci heaps consists of following steps.

  1. Concatenate the roots of both the heaps.
  2. Update min by selecting a minimum key from the new root lists.
Union of two heaps
Union of two heaps

Extract Min

It is the most important operation on a fibonacci heap. In this operation, the node with minimum value is removed from the heap and the tree is re-adjusted.

The following steps are followed:

  1. Delete the min node.
  2. Set the min-pointer to the next root in the root list.
  3. Create an array of size equal to the maximum degree of the trees in the heap before deletion.
  4. Do the following (steps 5-7) until there are no multiple roots with the same degree.
  5. Map the degree of current root (min-pointer) to the degree in the array.
  6. Map the degree of next root to the degree in array.
  7. If there are more than two mappings for the same degree, then apply union operation to those roots such that the min-heap property is maintained (i.e. the minimum is at the root).

 

An implementation of the above steps can be understood in the example below.

  1. We will perform an extract-min operation on the heap below.
    Extract min
    Fibonacci Heap
  2. Delete the min node, add all its child nodes to the root list and set the min-pointer to the next root in the root list.
    Delete the min node
    Delete the min node
  3. The maximum degree in the tree is 3. Create an array of size 4 and map degree of the next roots with the array.
    Create an array
    Create an array
  4. Here, 23 and 7 have the same degrees, so unite them.
    Unite those having the same degrees
    Unite those having the same degrees
  5. Again, 7 and 17 have the same degrees, so unite them as well.
    Unite those having the same degrees
    Unite those having the same degrees
  6. Again 7 and 24 have the same degree, so unite them.
    Unite those having the same degrees
    Unite those having the same degrees
  7. Map the next nodes.
    Map the remaining nodes
    Map the remaining nodes
  8. Again, 52 and 21 have the same degree, so unite them
    Unite those having the same degrees
    Unite those having the same degrees
  9. Similarly, unite 21 and 18.
    Unite those having the same degrees
    Unite those having the same degrees
  10. Map the remaining root.
    Map the remaining nodes
    Map the remaining nodes
  11. The final heap is.
    Final heap
    Final fibonacci heap

Python Examples

/* Fibonacci Heap in python */

import math

/* Creating fibonacci tree */
class FibonacciTree:
    def __init__(self, value):
        self.value = value
        self.child = []
        self.order = 0

    /* Adding tree at the end of the tree */
    def add_at_end(self, t):
        self.child.append(t)
        self.order = self.order + 1


/* Creating Fibonacci heap */
class FibonacciHeap:
    def __init__(self):
        self.trees = []
        self.least = None
        self.count = 0

    /* Insert a node */
    def insert_node(self, value):
        new_tree = FibonacciTree(value)
        self.trees.append(new_tree)
        if (self.least is None or value < self.least.value):
            self.least = new_tree
        self.count = self.count + 1

    /* Get minimum value */
    def get_min(self):
        if self.least is None:
            return None
        return self.least.value

    /* Extract the minimum value */
    def extract_min(self):
        smallest = self.least
        if smallest is not None:
            for child in smallest.child:
                self.trees.append(child)
            self.trees.remove(smallest)
            if self.trees == []:
                self.least = None
            else:
                self.least = self.trees[0]
                self.consolidate()
            self.count = self.count - 1
            return smallest.value

    /* Consolidate the tree */
    def consolidate(self):
        aux = (floor_log(self.count) + 1) * [None]

        while self.trees != []:
            x = self.trees[0]
            order = x.order
            self.trees.remove(x)
            while aux[order] is not None:
                y = aux[order]
                if x.value > y.value:
                    x, y = y, x
                x.add_at_end(y)
                aux[order] = None
                order = order + 1
            aux[order] = x

        self.least = None
        for k in aux:
            if k is not None:
                self.trees.append(k)
                if (self.least is None
                        or k.value < self.least.value):
                    self.least = k


def floor_log(x):
    return math.frexp(x)[1] - 1


fibonacci_heap = FibonacciHeap()

fibonacci_heap.insert_node(7)
fibonacci_heap.insert_node(3)
fibonacci_heap.insert_node(17)
fibonacci_heap.insert_node(24)

print('the minimum value of the fibonacci heap: {}'.format(fibonacci_heap.get_min()))

print('the minimum value removed: {}'.format(fibonacci_heap.extract_min()))

Complexities

Insertion O(1)
Find Min O(1)
Union O(1)
Extract Min O(log n)
Decrease Key O(1)
Delete Node O(log n)

Fibonacci Heap Applications

  1. To improve the asymptotic running time of Dijkstra’s algorithm.

 

 

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