Data Analytics – GGPLOT THEMES GALLERY

Data Analytics – GGPLOT THEMES GALLERY

 

In this R graphics tutorial, we present a gallery of ggplot themes.

You’ll learn how to:

  • Change the default ggplot theme by using the list of the standard themes available in ggplot2 R package. Our selection of best ggplot themes for professional publications or presentations, include: theme_classic(), theme_minimal() and theme_bw(). Another famous theme is the dark themetheme_dark().
  • Use other helpful examples of ggplot2 themes available in the ggthemes R package. These include theme_tufte(), theme_economist() and theme_hc(). You’ll also see how to create a tufte minimalist boxplot.
  • Modify, at once, all the theme text elements by specifying the ggplot base_size argument in the theme functions. Example: p + theme_minimal(base_size = 18).
  • Change the theme for the entire session using theme_set(). For example, is you type theme_set(theme_classic(base_size = 16)) in the R console, then the classic theme will be automatically applied to every plot you draw. The theme_set() function completely override the current active theme.
  • Create your own custom theme.

 

Contents:

  • Basic ggplot
  • Change themes
    • Use themes in ggplot2
    • Use ggthemes
    • theme_tufte
    • theme_economist
    • theme_stata
    • theme_hc
  • Override the current theme: theme_set
  • Change ggplot theme base_size and base_family
  • Create a custom theme
  • Conclusion

 

Basic ggplot

Data: ToothGrowth

# Convert the column dose to factor variable
data("ToothGrowth")
ToothGrowth$dose <- as.factor(ToothGrowth$dose)

# Create a simple boxplot
library(ggplot2)
p <- ggplot(ToothGrowth, aes(x = dose, y = len)) + 
  geom_boxplot()

Change themes

Use themes in ggplot2

Several simple functions are available in ggplot2 package to set easily a ggplot theme. These include:

  • theme_gray(): Gray background color and white grid lines. Put the data forward to make comparisons easy.
  • theme_bw(): White background and gray grid lines. May work better for presentations displayed with a projector.
  • theme_linedraw(): A theme with black lines of various widths on white backgrounds, reminiscent of a line drawings.
  • theme_light(): A theme similar to theme_linedraw() but with light grey lines and axes, to direct more attention towards the data.

 

p + theme_gray(base_size = 14) 

p + theme_bw()

p + theme_linedraw()

p + theme_light()

  • theme_dark(): Same as theme_light but with a dark background. Useful to make thin coloured lines pop out.
  • theme_minimal(): A minimal theme with no background annotations
  • theme_classic(): A classic theme, with x and y axis lines and no gridlines.
  • theme_void(): a completely empty theme, useful for plots with non-standard coordinates or for drawings.

 

p + theme_dark() 

p + theme_minimal()

p + theme_classic()

p + theme_void()

Use ggthemes

The R package ggthemes provides another gallery of custom ggplot themes, which include:

  • theme_tufte(): a minimalist theme
  • theme_economist(): theme based on the plots in the economist magazine
  • theme_stata(): theme based on stata graph schemes.
  • theme_hc(): theme based on Highcharts JS

 

To use these themes, first install and load the ggthemes package as follow :

install.packages("ggthemes") # Install 

library(ggthemes) # Load

Then, create two basic ggplot: scatter plot and boxplot.

# Scatter plot
sp <- ggplot(mtcars, aes(wt, mpg)) +
  geom_point() 
sp

# Boxblot
ToothGrowth$dose <- as.factor(ToothGrowth$dose)
bxp <- ggplot(ToothGrowth, aes(x = dose, y = len)) +
  geom_boxplot(aes(fill = dose))
bxp

theme_tufte

Key R functions:

  • theme_tufte(): set tufte theme
  • geom_tufteboxplot(): Create tufte boxplot
  • geom_rangeframe(): Extend axis lines to the maximum and the minimum of the plot data

 

Create a scatter plot with tufte theme:

library(ggthemes)
sp + geom_rangeframe() +  theme_tufte()

Create a tufte boxplot. The function `geom_tufteboxplot() creates several variants of Tufte’s minimal-ink boxplots. The following R code, will create two types of boxplots.

  1. Boxplot 1:
    • a point indicates the median,
    • a gap indicates the interquartile range,
    • and lines the whiskers
  2. Boxplot 2:
    • a wide line indicates interquartile range,
    • a gap indicates the median,
    • and lines indicate the minimum and maximum

 

p <- ggplot(ToothGrowth, aes(factor(dose), len)) +
  theme_tufte(ticks = FALSE)

# Box plot 1
p + geom_tufteboxplot()

# Box plot 2
p + geom_tufteboxplot(median.type = "line", 
                      whisker.type = 'line',
                      hoffset = 0, width = 3)

theme_economist

Key R functions:

  • theme_economist()
  • scale_fill_economist()
  • scale_color_economist()

 

Create a boxplot with the economist theme:

bxp + theme_economist() + scale_fill_economist()

theme_stata

Key R functions:

  • theme_stata()
  • scale_fill_stata()
  • scale_color_stata()

 

bxp + theme_stata() + scale_fill_stata()

theme_hc

bxp + theme_hc()+ scale_colour_hc()

Override the current theme: theme_set

The function theme_set() can be used to change the theme for the entire session. It returns the old theme, so that we can restore it later.

p <- ggplot(ToothGrowth, aes(x = dose, y = len)) + 
  geom_boxplot()
# Set theme_bw()
old.theme <- theme_set(theme_bw())
p

# Restore the old theme
theme_set(old.theme)
p

Change ggplot theme base_size and base_family

Note that, the theme functions can take the two arguments below :

  • base_size: base font size (to change the size of all plot text elements)
  • base_family: base font family

For example, the size of all the plot text elements can be easily changed at once, using:

p + theme_gray(base_size = 18, base_family = "Times")

Create a custom theme

The function theme() is used to control non-data parts of a ggplot2 graph, including

  • Line elements: axis lines, minor and major grid lines, plot panel border, axis ticks background color, etc.
  • Text elements: plot title, axis titles, legend title and text, axis tick mark labels, etc.
  • Rectangle elements: plot background, panel background, legend background, etc.

 

There is a specific function to modify each of these three elements :

  • element_line(color, size, linetype) to modify the line elements of the theme
  • element_text(face, color, size, hjust, vjust, angle) to modify the text elements
  • element_rect(fill, color, size, linetype) to modify the rectangle elements

 

Note that, each of the theme elements can be removed using the function element_blank().

The easiest way to create a custom theme is, for example, to extract and modify the R code of the function theme_gray() or any other theme functions [theme_bw(), theme_classic(), etc].

  • Build your theme from scrach by starting with the source code of the function theme_gray():
theme_gray

function (base_size = 11, base_family = "") {
  
 half_line <- base_size/2
 
theme(
  ...
  axis.text = element_text(size = rel(0.8), colour = "grey30"),
  ...
  )

}
  • Create a new theme called theme_bluewhite() by starting with the source code of the function theme_bw(). We’ll replace only some theme elements.
# Create a new theme
theme_bluewhite <- function (base_size = 11, base_family = "") {
    theme_bw() %+replace% 
    theme(
      panel.grid.major  = element_line(color = "white"),
      panel.background = element_rect(fill = "lightblue"),
      panel.border = element_rect(color = "lightblue", fill = NA),
      axis.line = element_line(color = "lightblue"),
      axis.ticks = element_line(color = "lightblue"),
      axis.text = element_text(color = "steelblue")
      )
}

# Using our new theme
ggplot(ToothGrowth, aes(dose, len)) +
  geom_boxplot() +
  theme_bluewhite()

Conclusion

We present a list of ggplot themes to easily customize your graphs. We also describe how to create a custom ggplot theme.

The main points as shown below.

  • Create an example of ggplot:
library(ggplot2)
p <- ggplot(ToothGrowth, aes(x = dose, y = len)) + 
  geom_boxplot()
  • Change ggplot the background theme by using one of the following professional themes:
    • theme_bw(), theme_minimal(), theme_classic() and theme_dark() [in ggplot2 package]
    • theme_tufte() and theme_economist() [in ggthemes]
p + theme_minimal()

 

Python Example for Beginners

Two Machine Learning Fields

There are two sides to machine learning:

  • Practical Machine Learning:This is about querying databases, cleaning data, writing scripts to transform data and gluing algorithm and libraries together and writing custom code to squeeze reliable answers from data to satisfy difficult and ill defined questions. It’s the mess of reality.
  • Theoretical Machine Learning: This is about math and abstraction and idealized scenarios and limits and beauty and informing what is possible. It is a whole lot neater and cleaner and removed from the mess of reality.

 

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